On Sun, Feb 12, 2012 at 4:34 PM, Peter Cock <p.j.a.c...@googlemail.com>wrote:

> On Sun, Feb 12, 2012 at 10:28 PM, Arthur Zheng <haoz...@gmail.com> wrote:
> > Hi,
> >
> > I have downloaded and installed a local instance of galaxy on the linux
> > server using my user account according to here:
> > http://main.g2.bx.psu.edu/
> >
> > Then I ran the following command:
> >> sh run.sh
> > and accessed galaxy through the local firefox browser on the server
> > http://localhost:8080
> >
> > Now I am trying to use some NGS files for FASTQ Groomer. Each file is in
> the
> > server disk already, but very large (~8G each).
> > I was not able to use the "upload file from your computer" function under
> > the "Get Data" tab (maybe because each file is too large).
> >
> > What am I supposed to do?
> >
> > Thank you!
> >
> > Arthur
>
> The method you tried "uploads" the file from your computer back to
> itself - making a copy as it goes with lots of overhead. You should
> probably consider the procedure here which allows you to avoid
> even making a copy on disk but point at the existing files already
> on the server:
>
>
> http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Uploading%20Library%20Files
>
> Peter
>



Hi Peter,

I have followed the link you provided and selected the option "Upload
directory of files".
Now my NGS data are in the library, and I am wondering how I can feed them
to FASTQ Groomer?

Thanks!


Arthur
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