Hi, I hope someone can help me on how to implement this into a wrapper. We would like to add an option so the user can set a sample name which then be used for the prefix of the output files names. For example, Is it possible to provide a sample name that can be used to prefix the output files? For example, could I specify a sample name "S" and have the output files be "S.gene_abundances" "S.isoform_abundances", "S.rsem_log", and "S.bam"?
I know we can name the files from the xml, but is the a away to allow the user to pass this prefix without having to do a recursive conditional in the xml file to set this prefix? Or any other way people are doing this? Thanks in advance. Victor ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/