I have GALAXY installed in a UNIX server. BOWTIE works fine but TOPHAT and
CUFFDIFF crash upon starting.
In the case of TOPHAT, I noticed that GALAXY has a 1.5.0 version
integrated, while the TOPHAT website claims the latest version is 1.4.1.
My question is which are the best/appropiate TOPHAT and CUFFDIFF versions?
The error message I get is TOPHAT not recognized.
Any other suggestions?
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