Genaro, > My question is which are the best/appropiate TOPHAT and CUFFDIFF versions?
Galaxy wrapper versions do not match tool versions. The tag 'requirements' will eventually be used to specify versions, but this work is not yet complete. You should use Tophat v1.4.0 or 1.4.1 and Cufflinks v1.3.0 for now. > The error message I get is TOPHAT not recognized. To solve this problem, you'll need to install Tophat and add it to your Galaxy user's path > Any other suggestions? Please send questions about local Galaxy installs to galaxy-dev rather than galaxy-user; galaxy-user is for questions about how to use Galaxy for bioinformatics analyses. Thanks, J. ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
