I'm facing an issue with "Depth Of Coverage" tool when it runs on refGene and
target BED file. The error message is:
File "cheetah_DynamicallyCompiledCheetahTemplate_1330588825_26_16118.py", line
402, in respond
NotFound: cannot find 'omit_interval_statistics' while searching for
I noticed that the issue is only when the "Advanced GATK options" is enabled to
set target BED file.
The commandline runs perfectly with the input files, but galaxy fails due to
this error. Can anyone suggest what's the issue?
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