Dear Galxy admin and user

I have generated BAM file from my RNa seq data by using Bowtie with custom 
reference, followed by Filter SAM and SAM to BAM connversion, i wish to run 
cufflink, but its just givinbg me emty file, 

any suggestion, 
how to proceed

 
Ateequr Rehman
House No. 2 ground floor
Blauenstr. 10
79115 Freiburg im Breisgau
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