Hi Galaxy Team,
I'm trying to use GATK DepthOfCoverage, and to give a BAM file of alined
results as input.


My steps were:
1. BWA alignment
2. SAM-to-BAM
3. rmdup.

when I'm trying to give 3 (rmdup results) as an input to GATK
DepthOfCoverage, an error appears: "
  Sequences are not currently available for the specified build."

What did I do wrong?


Many thanks!
   Lilach
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