I'm forwarding this to our official user mailing list. Please, use it in the
future for your inquiries.
On Apr 3, 2012, at 4:37 PM, xu hong wrote:
> Hi Anton,
> I'm a biological student using Galaxy sever to fetch sequences in
> fasta format for our bioinformatics data analysis. First, I uploaded
> our BED file(I think there is no significant difference from the GFF
> format defined in Galaxy/UCSC), and then use "Fetch Sequences"
> function in Galaxy Server.
> However, I got the following error:
> "2: Extract Genomic DNA on data 1
> 0 bytes
> An error occurred running this job: Traceback (most recent call last):
> File "/galaxy/home/g2main/galaxy_main/tools/extract/extract_genomic_dna.py",
> line 288, in <module>
> f __name__ == "__main__": __main__()
> File "/galaxy/home/g2main/galaxy_main/tools/extract/extract_genomic_dna.py"
> Could you help me configure out what's wrong with my analysis or could
> you get the fasta file I want for me?
> Attached is the BED file(based on hg18) I uploaded to Galaxy server in psu.
> Beg your reply.
> Hong Xu
> Zhejiang University,China
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