Hello Abdullah,

Galaxy can convert BED data to GFF data (type in "GFF" in tool search, top of right tool panel). So, any BED file created (MACS, etc.) or imported ("Get Data" or other) could be converted and exported as GFF. Please note this is "GFF", not "GFF3".


SeqMonk also accepts BED format, so converting may not be necessary. GTF and BAM/SAM are also accepted.

Is this what you wanted to know? Did you have a specific data in mind that you wanted to create/obtain for visualization?

Please let us know if we can help more,

Jen
Galaxy team

On 4/2/12 12:18 PM, Abdullah Al Mahmud wrote:
Hi,

Is it possible to generate gff file in galaxy which I can use in Seqmonk?

Abdullah

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