Hi Raj,

To run the workflow on multiple samples, start it up on each paired set individually. These can be initiated to run in parallel.


A 'master workflow' controller that would manage workflows as modules in a larger pipeline (or something similar) has been discussed, but any development in this direction isn't currently planned for in the near-term.

Take care,

Jen
Galaxy team

On 4/4/12 4:46 AM, Praveen Raj Somarajan wrote:
Hello All,

I'm seeking help on how do we run a workflow (say bwa mapping on PE
data) on multiple samples (eg: 10 samples, PE data) together. I assume
"multiple input files selection" option does not work here as the
workflow accepts two fastq input files (PE data). Do you have any
experience on this?

Best,

Raj


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