Hello Jean,

There is no method for transferring existing genomes/indexes to user histories.


This tool set is brand-new on the public server and is released as beta. In the near-term, more genomes will be indexed and added, but for now, using a Custom reference genomes is the available option.
http://wiki.g2.bx.psu.edu/Support#Custom_reference_genome

mm9 comes from UCSC and is available from their downloads server at:
http://hgdownload.cse.ucsc.edu/goldenPath/mm9/
If you need help navigating, UCSC's help is at:
http://genome.ucsc.edu/contacts.html

Best,

Jen
Galaxy team

On 4/20/12 2:47 AM, Jean JAUBERT wrote:
Hi,

The NGS: GATK Tools on main are so far only for human genome.
Do you have an idea when other genomes (such as my favorite, i.e mice
and mm9) would be accessible ?
Otherwise, is there a way to easily transfer "mm9 genome that is
system-installed on main" directly in a "Custom build genome" that could
be used in such a case ? Or is this a bad idea ?
Thanks for your help,
Best.

Jean Jaubert
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