Dear Galaxy Community,
The May 11, 2012 Galaxy Distribution has been released at:
http://bitbucket.org/galaxy/galaxy-dist/
Complete News Brief <http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_05_11>
*Highlights:*
* *EMBOSS* tools and datatypes have now moved from the _/Galaxy
distribution/_ <http://bitbucket.org/galaxy/galaxy-dist/> to the
/Galaxy Main Tool Shed/ <http://toolshed.g2.bx.psu.edu>.
* Tool Integration Tests
<http://wiki.g2.bx.psu.edu/Tool%20Shed#Using_Galaxy.27s_functional_test_framework_to_test_tools_installed_into_your_local_Galaxy_instance>,
Custom Tool Panel Configuration
<http://wiki.g2.bx.psu.edu/Tool%20Shed#Managing_the_layout_of_your_Galaxy_tool_panel>,
and Configurable Tool Output Locations
<http://wiki.g2.bx.psu.edu/Admin/Tools/Multiple%20Output%20Files>.
* Improved Multiprocess Job Handling
<http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Web%20Application%20Scaling>
and Enhanced OpenID <http://openid.net> Support.
* GATK <http://www.broadinstitute.org/gsa/wiki> version 1.4,
FreeBayes <http://github.com/ekg/freebayes>, Updated *Megablast* using
NCBI BLAST+ <http://blast.ncbi.nlm.nih.gov/Blast.cgi>, Trinity
<http://trinityrnaseq.sourceforge.net>, WormBase 2
<http://www.wormbase.org>, and IGB <http://bioviz.org/igb/index.html>
external display.
* Trackster <http://wiki.g2.bx.psu.edu/Learn/Visualization>
upgrades include /strand coloring/, /interval datatype support/, and
/tabix indexing/ (fast!!).
* Updated *User Interface*, *Workflow-API* upgrades, and *Custom
UCSC Display*.
*http://getgalaxy.org*
*new*: % hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist
*upgrade*: % hg pull -u -r 17d57db9a7c0
/Thanks for using Galaxy!/
Jennifer Jackson
Galaxy Team <http://wiki.g2.bx.psu.edu/Galaxy%20Team>
http://galaxyproject.org
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