Given sample names are not carried through Cufflinks pipeline. Instead,
they are referenced with a number and in final Cuffdiff output are
referred to as Sample 1/Q1, Sample 2/Q2 etc., instead of given name
which requires tedious re-labeling.
Is there a way to implement -L function in Galaxy so that sample names
are carried through from Cufflinks to Cuffdiff?
Originally posted in Seqanswers:
http://seqanswers.com/forums/showthread.php?t=20338, where commenter
suggested using -L as a fix but I don't see this option in Galaxy.
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