Hi Thomas,
Did you try restarting the instance (from AWS console or CloudMan's Admin
page (preferred))?

I just started a clean, new instance and everything setup just fine. If you
still have trouble, try starting your cluster via biocloudcentral.org.
Also, CloudMan's full log is available on the Admin page and there should
be more info there about what is happening and thus more insight into why
it failed so looking there may help.

Let us know if you still have trouble,
Enis

On Thu, May 31, 2012 at 5:21 AM, Randall, Thomas (NIH/NIEHS) [C] <
thomas.rand...@nih.gov> wrote:

> The last few times I have tried to initiate a galaxy instance on the cloud
> I have gotten messages like the following:****
>
> ** **
>
> ·  18:42:04 - Master starting****
>
> ·  18:42:05 - Completed initial cluster configuration.****
>
> ·  18:42:09 - Prerequisites OK; starting service 'SGE'****
>
> ·  18:42:20 - Configuring SGE...****
>
> ·  18:42:29 - Successfully setup SGE; configuring SGE****
>
> ·  18:42:29 - Saved file 'persistent_data.yaml' to bucket
> 'cm-26cac39701f0918ab9a9dca54f69e925'****
>
> ·  18:42:29 - Saved file 'cm_boot.py' to bucket
> 'cm-26cac39701f0918ab9a9dca54f69e925'****
>
> ·  18:42:29 - Problem connecting to bucket
> 'cm-26cac39701f0918ab9a9dca54f69e925', attempt 1/5****
>
> ·  18:42:32 - Saved file 'cm.tar.gz' to bucket
> 'cm-26cac39701f0918ab9a9dca54f69e925'****
>
> ·  18:42:32 - Saved file 'test.clusterName' to bucket
> 'cm-26cac39701f0918ab9a9dca54f69e925'****
>
> ·  18:44:34 - Initializing a 'Galaxy' cluster.****
>
> ·  18:44:34 - Retrieved file 'snaps.yaml' from bucket 'cloudman' to
> 'cm_snaps.yaml'.****
>
> ·  18:45:25 - Error mounting file system '/mnt/galaxyData' from
> '/dev/sdg3', running command '/bin/mount /dev/sdg3 /mnt/galaxyData'
> returned code '32' and following stderr: 'mount: you must specify the
> filesystem type '****
>
> ·  18:45:27 - Prerequisites OK; starting service 'Postgres'****
>
> ·  18:45:27 - PostgreSQL data directory '/mnt/galaxyData/pgsql/data' does
> not exist (yet?)****
>
> ·  18:45:27 - Configuring PostgreSQL with a database for Galaxy...****
>
> ·  18:45:39 - Prerequisites OK; starting service 'Galaxy'****
>
> ·  18:45:39 - Setting up Galaxy application****
>
> ·  18:45:40 - Retrieved file 'universe_wsgi.ini.cloud' from bucket
> 'cloudman' to '/mnt/galaxyTools/galaxy-central/universe_wsgi.ini'.****
>
> ·  18:45:40 - Retrieved file 'tool_conf.xml.cloud' from bucket 'cloudman'
> to '/mnt/galaxyTools/galaxy-central/tool_conf.xml'.****
>
> ·  18:45:40 - Retrieved file 'tool_data_table_conf.xml.cloud' from bucket
> 'cloudman' to
> '/mnt/galaxyTools/galaxy-central/tool_data_table_conf.xml.cloud'.****
>
> ·  18:45:40 - Starting Galaxy...****
>
> ·  18:45:51 - Saved file 'persistent_data.yaml' to bucket
> 'cm-26cac39701f0918ab9a9dca54f69e925'****
>
> ·  18:49:34 - Galaxy daemon not running.****
>
> ·  18:49:34 - Galaxy service state changed from 'Starting' to 'Error'****
>
> ·  18:49:35 - Saved file 'persistent_data.yaml' to bucket
> 'cm-26cac39701f0918ab9a9dca54f69e925'****
>
> ·  18:49:41 - Galaxy daemon not running.****
>
> ·  18:49:58 - Galaxy daemon not running.****
>
> ·  18:50:15 - Galaxy daemon not running.****
>
> ** **
>
> I am using 861460482541/galaxy-cloudman-2011-03-22, which is supposed to
> be the current version.****
>
> Tom****
>
> ** **
>
> Thomas Randall, PhD****
>
> Bioinformatics Scientist, Contractor****
>
> Integrative Bioinformatics****
>
> National Institute of Environmental Health Sciences****
>
> P.O. Box 12233, Research Triangle Park, NC 27709****
>
> randall...@niehs.nih.gov****
>
> 919-541-2271****
>
> ** **
>
> ___________________________________________________________
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> use the Galaxy Development list:
>
>  http://lists.bx.psu.edu/listinfo/galaxy-dev
>
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> please use the interface at:
>
>  http://lists.bx.psu.edu/
>
___________________________________________________________
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Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

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To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

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