Dear Galaxy,

I've been searching the lists for this type of issue and only found
one solution thus far which is the use of a custom reference. It
doesn't make sense in my situation because the reference I used was
from Galaxy itself when I mapped my data. I'm now trying to use GATK
to find SNPs but no matter what I've tried I can't get past this
issue. I'm trying to use the Count Covariates and the Unified
Genotyper but to no avail. The only issue appears to be that
"Sequences are not currently available for the specified build."

Any help would be much appreciated. Thanks


Richard Linchangco
PSM in Bioinformatics
College of Computing and Informatics
University of North Carolina at Charlotte
Tel: (630)440-7010,
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