Dear Community Members

Complete Genomics, Inc<>. is happy to announce 
the release of a CGA Tools™ implementation in Galaxy. CGA Tools™  is an open 
source project<> to provide tools for 
downstream analysis of Complete Genomics Whole Genome Sequencing data. This 
first release includes the most commonly used functions of CGA Tools™ such as 
listvariants, testvariants, calldiff, snpdiff, junctiondiff, join and 
varfilter. Ongoing development will add other functions of CGA Tools™, which 
were not part of this release, and a variety of data analysis workflows.

There are two repositories available for download from the Galaxy Tools 
Shed<>: a linux  version, cg_cgatools_linux, and 
a Mac OSX version, cg_cgatools_mac_osx. Both repositories are bundled with the 
latest version of CGA Tools™ ( for the respective operating system and 
contain instructions for automated and manual installation of the tools, as 
well as instructions for the download and installation of reference genome 

Please reply to this post with any comments to this release and suggestions for 
future development, or contact us at<>

Best regards

Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete Genomics, 


The contents of this e-mail and any attachments are confidential and only for 
use by the intended recipient. Any unauthorized use, distribution or copying of 
this message is strictly prohibited. If you are not the intended recipient 
please inform the sender immediately by reply e-mail and delete this message 
from your system. Thank you for your co-operation.
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

Reply via email to