Hello Irene,

There appears to be a problem with the information entered into the tool form for the labels (e.g. "Group name"). The command string only shows one group label value when there are two group data sets.


You submitted a bug report for this same issue, so I will take a look there at the exact error (usually is very specific about problem) and at the exact settings entered into tool form and provide feedback there.

Thanks,

Jen
Galaxy team

On 7/20/12 9:19 AM, i b wrote:
Hi,
I had  3 samples (2replicates treated (A-B) and one untreated (C) ).

I did cufflnks and cuffmerge (all 3 cufflinks)

I run cuffdiff with the following options:
cuffmerge
+ tophats from A, B, C (2 groups: gr.one with A, B), gropu2: C.

I had the following message:

0 bytes
An error occurred running this job: cuffdiff v1.3.0 (3022)
cuffdiff --no-update-check -q -p 8 -c 10 --FDR 0.050000 -N -b
/galaxy/data/hg19/sam_index/hg19.fa --labels +
/galaxy/main_pool/pool4/files/004/645/dataset_4645857.dat
/galaxy/main_pool/pool3/files/004/623/dataset_4623286.dat,/galaxy

Where did I do wrong? What does it mean?

Cheers,
ib
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

   http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

   http://lists.bx.psu.edu/


--
Jennifer Jackson
http://galaxyproject.org
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

 http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

 http://lists.bx.psu.edu/

Reply via email to