I am attempting to run Cufflinks on Galaxy main to analyze my E. coli
RNAseq data.  I have mapped my reads using an outside program (Genious) and
uploaded the resulting BAM file.  I also have uploaded the E. coli
annotations as a gtf file.  However when I attempt to run Cufflinks using
my annotations it just stays on "Job is waiting to run" for hours.  If I
click on "Edit attributes", I see an error message "Required metadata
values are missing".  Does this mean that my files are somehow incomplete
and cufflinks will never run, or do I just need to wait longer?  When
searching around the mailing lists I saw others have had issues with
bacteria due to its circular chromosome, and was wondering if this might
somehow be related.  Thanks.

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