I have been trying to use either Unified genotyper or Freebayes on one of the
Bam file. Both are failing.
1. With Unified genotyper it give me message saying Sequences are not currently
available for specified build. I have hg19 related data and using default
settings (pick up hg_g1k_v37 no other option). I am not sure why it is giving
me this error.
2. As an alternative I tried to run Freebayes with default setting and choosing
hg19 - it i snot giving any specific message but undetr bug icon gives me
Now in order to make sure my Bam is OK, I tested out side Galaxy mPile up and
with in Galaxy pile up. Any suggestion why UNified genotyper is not working. If
needed I can share my history.
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: