Hi Jelle,
           I'm still having issues with Apache. I've moved 

RewriteEngine on
RewriteRule ^/galaxy$ /galaxy/ [R]
RewriteRule ^/galaxy/static/style/(.*) 
/home/galaxy/galaxy-dist/static/june_2007_style/blue/$1 [L]
RewriteRule ^/galaxy/static/scripts/(.*) 
/home/galaxy/galaxy-dist/static/scripts/packed/$1 [L]
RewriteRule ^/galaxy/static/(.*) /home/galaxy/galaxy-dist/static/$1 [L]
RewriteRule ^/galaxy/favicon.ico /home/galaxy/galaxy-dist/static/favicon.ico [L]
RewriteRule ^/galaxy/robots.txt /home/galaxy/galaxy-dist/static/robots.txt [L]
RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]

from /var/www/.htaccess to /etc/apache2/httpd.conf

I still get a "404 Not found" error when trying to access galaxy 
(http://140.253.78.44/galaxy )

http://140.253.78.44 still gets the "It Works!" Apache default index.html

and http://140.253.78.44:8080 gets the galaxy page

/var/log/apache2/error.log states...

[Fri Aug 24 07:35:27 2012] [error] [client 140.253.78.44] File does not exist: 
/var/www/favicon.ico
[Fri Aug 24 07:36:25 2012] [error] [client 140.253.78.44] File does not exist: 
/var/www/galaxy

Now if I change httpd.conf and add the vitrtualHost tags to:

ServerName localhost
<VirtualHost *:80>
  RewriteEngine on
  RewriteRule ^/galaxy$ /galaxy/ [R]
  RewriteRule ^/galaxy/static/style/(.*) 
/home/galaxy/galaxy-dist/static/june_2007_style/blue/$1 [L]
  RewriteRule ^/galaxy/static/scripts/(.*) 
/home/galaxy/galaxy-dist/static/scripts/packed/$1 [L]
  RewriteRule ^/galaxy/static/(.*) /home/galaxy/galaxy-dist/static/$1 [L]
  RewriteRule ^/galaxy/favicon.ico /home/galaxy/galaxy-dist/static/favicon.ico 
[L]
  RewriteRule ^/galaxy/robots.txt /home/galaxy/galaxy-dist/static/robots.txt [L]
  RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]
</VirtualHost>

I now get a "403 Forbidden" error when trying to access 
(http://140.253.78.44/galaxy ) You don't have permission to access /galaxy/ on 
this server, and /var/log/apache2/error.log states..

[Fri Aug 24 07:45:33 2012] [error] [client 140.253.78.44] attempt to make 
remote request from mod_rewrite without proxy enabled: 
proxy:http://localhost:8080/
[Fri Aug 24 07:45:34 2012] [error] [client 140.253.78.44] File does not exist: 
/etc/apache2/htdocs

Any help much appreciated

Neil
________________________________________
From: Jelle Scholtalbers [j.scholtalb...@gmail.com]
Sent: Thursday, August 23, 2012 8:20 PM
To: Burdett, Neil (ICT Centre, Herston - RBWH)
Cc: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] Installing galaxy with Apache ...

Hi Neil,

with your current apache configuration, you should probably see Galaxy
at http://yourip/galaxy
This is due to your Rewriterule /galaxy and for that you have also set
proxy_prefix = /galaxy in your universe_wsgi.ini

You should probably remove the empty galaxy directory under /var/www
Furthermore, most of the time you will not need a directory with 777
in your apache web/documentroot..

Cheers,
Jelle

On Thu, Aug 23, 2012 at 8:34 AM,  <neil.burd...@csiro.au> wrote:
> Hi
>    I've installed galaxy with the default settings and it works fine.
>
> On a new Ubuntu machine I am trying to get galaxy running with Apache. But I 
> am having problems, I've followed the documentation.
>
> After installing Apache I can put my ip address into a browser and I get 
> message saying Apache is working fine. It displays a message from 
> /var/www/index.html
>
> Now when I start galaxy I was assuming I would get redirected to the galaxy 
> welcome page, but this doesn't happen and it remains at /var/www/index.html. 
> To view the welcome page I have to add ":8080" after the ip address. Is this 
> still required? I thought that Apache would know to redirect to my 
> distribution....What am I doing wrong?
>
> /etc/apache2/sites-available/default-ssl and 
> /etc/apache2/sites-available/default look like this ...
>
>         DocumentRoot /var/www
>         <Directory />
>                 Options FollowSymLinks
>                 AllowOverride None
>         </Directory>
>         <Directory /var/www/>
>                 Options Indexes FollowSymLinks MultiViews
>                 AllowOverride None
>                 Order allow,deny
>                 allow from all
>         </Directory>
>
>  etc ...
>
> /var/www/.htaccess
>
> RewriteEngine on
> RewriteRule ^/galaxy$ /galaxy/ [R]
> RewriteRule ^/galaxy/static/style/(.*) 
> /home/galaxy/galaxy-dist/static/june_2007_style/blue/$1 [L]
> RewriteRule ^/galaxy/static/scripts/(.*) 
> /home/galaxy/galaxy-dist/static/scripts/packed/$1 [L]
> RewriteRule ^/galaxy/static/(.*) /home/galaxy/galaxy-dist/static/$1 [L]
> RewriteRule ^/galaxy/favicon.ico /home/galaxy/galaxy-dist/static/favicon.ico 
> [L]
> RewriteRule ^/galaxy/robots.txt /home/galaxy/galaxy-dist/static/robots.txt [L]
> RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]
>
> I created an empty 'galaxy' directory with 777 permissions on it under 
> /var/www
>
>
> and universe_wsgi.ini
>
>
> # Define the proxy-prefix filter.
> [filter:proxy-prefix]
> use = egg:PasteDeploy#prefix
> prefix = /galaxy
>
> # ---- Galaxy ---------------------------------------------------------------
>
> # Configuration of the Galaxy application.
>
> [app:main]
> filter-with = proxy-prefix
> cookie_path = /galaxy
>
>
> Thanks Neil
>
>
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