Hi Jianguang,

I'm the author of cummeRbund wrapper in the test Galaxy Tool Shed. I
never got around to quite finish it, that's why I never submitted to
main. Also cummeRbund received a big update since the time I was
writing this wrapper. I don't think I can recommend using the wrapper
in its current state at all.

In any case, even if the wrapper could help you, you would need to
deploy a local or a cloud instance of Galaxy,  as is not clear to me
that this wrapper would make its way to Galaxy Main server any time
soon. You would probably be better of by dealing with R and
cummeRbund, which by the way you should be able to use in Windows.

If I find the time to play with the cummeRbund Galaxy wrapper again,
I'll make sure to comment about it in this list.

Best,
Carlos

On Sat, Aug 25, 2012 at 8:09 PM, Dave Clements
<cleme...@galaxyproject.org> wrote:
> Hi Jianguang,
>
> I went to http://galaxy.psu.edu/search/web/ and searched for cummerbund.
>
> It looks like there is a cummerbund wrapper in the test Galaxy Tool Shed,
> but that is about it.
>
> Dave C
>
> On Fri, Aug 24, 2012 at 3:23 PM, Du, Jianguang <jia...@iupui.edu> wrote:
>>
>> Dear All,
>>
>> I am going to visualize Cuffdiff outputs. I understand that CummeRbund can
>> be used to visualize Cuffdiff outputs. However, I am not good at Linux
>> system and feel difficult to understand CummeRbund manual. Is there
>> web-based CummeRbund program (like Tophat and Cufflink) available for use?
>>
>> If web-based CummeRbund does not exist, is there other web-based program
>> can be used to visualize Cuffdiff outputs?
>>
>> Thanks.
>>
>> Jianguang
>>
>>
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___________________________________________________________
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