On Oct 2, 2012, at 3:26 PM, greg wrote:

> On Tue, Oct 2, 2012 at 2:15 PM, Nate Coraor <n...@bx.psu.edu> wrote:
>> Hi Greg,
>> You should start at the top level documentation for production servers:
>>    http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server
>> This includes instructions on how to set up a virtualenv.  You can make this 
>> the default by setting the $PATH in the Galaxy user's ~/.bash_profile to 
>> include the virtualenv's bin directory (at the beginning of $PATH).
> This makes sense, but I ultimately want to run the jobs as the logged
> in user as per this page:
> http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster#Submitting_Jobs_as_the_Real_User
> It wouldn't be feasible to add the virtualenv to every users' path.
> I'm hoping there's some kind of other way?

Indeed there is.  Have a look at the 'environment_setup_file' option in the 
config file.


> Thanks again,
> Greg

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