Hi Bjoern,

Thank you very much for your reply! I am working on one species of oyster and 
the gene_ids are created from the transcriptome dataset, which is in our own 
defined format. I already have the gene_ids and GO annotation for each gene. I 
would like to do the GO enrichment to see which are highly represented in the 
data. Is there a tool in Galaxy to fulfill this? 

Thanks again,
Yan

-----邮件原件-----
发件人: Björn Grüning [mailto:bjoern.gruen...@pharmazie.uni-freiburg.de] 
发送时间: Monday, October 08, 2012 2:06 PM
收件人: Yan He
抄送: galaxy-user@lists.bx.psu.edu
主题: Re: [galaxy-user] How to do an GO enrichment analysis in Galaxy?

Hi Yan,

have a look at the blast2GO wrapper in the toolshed. If you already have 
gene-ids you can download the GO in an appropriate format and intersect with 
your ids.

Hope that works,
Bjoern

> Hi everyone,
> 
>  
> 
> I got a list of differentially expressed genes from my RNA-seq data.
> Is there a tool on Galaxy that I can do the GO enrichment analysis for 
> the differentially expressed genes? Any help or suggestion is highly 
> appreciated!
> 
>  
> 
> Best regards,
> 
> Yan
> 
> 
> ___________________________________________________________
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