Thanks Jen.  But it looks like the datatype was already set to fasta.
I tried setting it again and saving but it didn't seem to help.

Is there anything else I can try?

thanks,

Greg

On Tue, Oct 9, 2012 at 9:10 PM, Jennifer Jackson <j...@bx.psu.edu> wrote:
> Hi Greg,
>
> Nice pic, it helps! My guess is that the datatype is not assigned as
> "fasta". To do this, click on the pencil icon for the custom reference
> genome dataset (#1) to bring up the Edit Attributes forms in the center
> panel. Then click on the "Datatype" tab and change this to be "fasta" and
> save.
>
> Full help in our wiki with Custom genomes starts here:
> http://wiki.g2.bx.psu.edu/Support#Custom_reference_genome
>
> Please let us know if you need more help,
>
> Jen
> Galaxy team
>
>
>
>
> On 10/9/12 11:08 AM, greg wrote:
>>
>> Hi guys,
>>
>> As shown in the attached screenshot I uploaded a fasta file.  And I
>> want to use it as my reference genome for running bow tie but it
>> doesn't appear in the dropdown on the bow tie tool.
>>
>> I'm sure I'm missing something obvious.
>>
>> Thanks,
>>
>> Greg
>>
>>
>>
>> ___________________________________________________________
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>
> --
> Jennifer Jackson
> http://galaxyproject.org
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