Hello Jerzy,
The MACS wrapper in Galaxy currently supports version 1.3, which
explains the problems with 1.4. Tool dependencies are noted on this wiki:
http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Dependencies
For the other errors, are you trying to run MACS on the command line or
within Galaxy? For command line, some environment variables need to be
set up, the MACS documentation has the details:
http://liulab.dfci.harvard.edu/MACS/INSTALL.html
Hopefully this helps,
Jen
Galaxy team
On 10/17/12 2:09 AM, Jerzy Dyczkowski wrote:
Hello,
I cannot run MACS on the local Galaxy. When I install MACS version 1.4.,
it gives error something like "cannot find macs". When I install version
1.3.7.1 it gives error "/line 34, in <module> from MACS.OptValidator
import opt_validate ImportError: No module named MACS.OptValidator"/
I sourced PATH to the directory with this module. Any ideas?
best regards,
Jerzy
--
Dr Jerzy Dyczkowski
Bioinformatician
Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE)
Grisebachstr. 5
D-37077 Göttingen
Email:jerzy.dyczkow...@eni-g.de
Phone: +49 (0)551 39-12352
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
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