I was trying to enter the 2nd fq file into the second dialog box for this
tool but then the selection automatically changes to be the same as the
filename in the first dialog.

is this a known issue?

NGS: Picard (beta)
FASTQ to BAM<https://main.g2.bx.psu.edu/tool_runner?tool_id=picard_FastqToSam>
an unaligned BAM file
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