Hi Bernardo, > Hello Galaxy community, > > > I would like to know if there is any available tool in Galaxy for > automated gene annotation. I need gene annotation in GTF or GFF3 > format to run CuffDiff on a RNA-Seq project that we are.
We have a tool, that annotates your prokaryotic genome, through similarity searches and creates a genbank file afterwards ... Is that what you are searching for? > If not, do you recommend me any software or utility. We have the > genome annotated in GenBank format, but searching in the web I've seen > that is not possible to convert GenBank format to GTF or GFF3. I think its possible. I have a 'GenBank / embl converter to GFF' and vice versa converter here. I will try to pack it and send it tomorrow when im back at work. Cheers, Bjoern > > I appreciate your opinions. > Thank you, Bernardo > > > -- > > > Bernardo Bello Ortí > > Becario predoctoral FPI > > CReSA-IRTA > > Campus de Bellaterra-Universitat Autònoma de Barcelona > > Edifici CReSA > > 08193 Bellaterra (Barcelona) > > Tel.: 647 42 52 63 www.cresa.es > > > > > > > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
