I am trying to use Galaxy to investigate gene expression differences among 
datasets.  The first time I used Tophat, everything worked fine and it returned 
a nice set of assembled transcripts.  However, I have since tried to use Tophat 
on additional datasets (in the same format as the first), and have repeatedly 
received the following error message, "An error occurred running this job:Job 
output not returned by PBS: the output datasets were deleted while the job was 
running, the job was manually dequeued or there was a cluster error."  Is this 
something that I am doing wrong, or a problem with the system?


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