Hello Giuseppe,
Fold is included in the Cuffdiff output. Section "Differential
expression tests", first file, column #9.
http://cufflinks.cbcb.umd.edu/manual.html
A tool like " Filter and Sort -> Filter" could be used to subset
specific values.
Hopefully this helps,
Jen
Galaxy team
On 11/29/12 5:35 AM, Ianiri, Giuseppe wrote:
Hey guys,
I have my Cuffdiff output and I was trying to figure out how to get
the data I need.
I am interested in the outputs Transcript and Gene differential
expressed. Does anyone know how to filter for +/- 2-fold difference in
expression levels?
Thank you
Giuseppe Ianiri, Ph.D.
Division of Cell Biology and Biophysics
School of Biological Sciences
5100 Rockhill Road
University of Missouri-Kansas City
Kansas City, MO 64110
Email: iani...@umkc.edu
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