Hi Kanwar,

This appears to be related to your latter question, but if not, please let us know. The "Make window" tool is a good choice for breaking up intervals and a tools such as "Line/Word/Character count" and "Compute" in the Text Manipulation group can compute some simple statistics on datasets and lines of data. The tool "Join, Subtract and Group -> Group" may also be helpful.


Best,

Jen
Galaxy team

On 12/7/12 10:54 AM, shamsher jagat wrote:
I have a bacterial genome which I divided into bins of 5 bp and counted reads in each bin. Now I want to use a sliding window of say 100 bp and count the average. Is there any option in Galaxy that I can do it I have bed file of data.

Thanks

Kanwar


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