Hi Luce,

We can duplicate the missing link problem and are in the processing of investigating/correcting.


Thank you for reporting the issue!

Jen
Galaxy team

On 12/11/12 5:36 AM, Lucy A. Skrabanek wrote:
Dear all,

For BED files, there used to be an option in the preview window to visualize 
them in the UCSC Genome Browser, but that seems to have disappeared. 
Specifically, from a TopHat/Cufflinks run, I used to be able to visualize the 
accepted hits, the splice junctions and the assembled transcripts datasets in 
the UCSC Genome browser by simply clicking on the 'display at UCSC' link. This 
link is still available for the accepted hits dataset, but seems to have 
disappeared for the other two datasets. I realize I can still visualize these 
datasets by downloading them (although this seems somewhat less convenient). Is 
the loss of this link to UCSC intentional?

Thanks,
luce
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