Yes, you are correct! I installed galaxy from scratch on the cloud. I will
check the site you provided and see how it goes.
I also have the preconfigured cloud instance set up recently. However, when I
stopped the instances (master and cluster nodes) from aws, I couldn't get the
galaxy web running again (the instance running however the DNS not able to
access). What is the right steps to stop the instances and restart it next time?
Thank you in advance,
From: Dannon Baker [mailto:dannonba...@me.com]
Sent: Wednesday, December 19, 2012 10:27 AM
To: Sun, Wenping [USA]
Subject: [External] Re: [galaxy-user] question on galaxy reference genome window
Are you using the galaxy cloud configuration provided by the team, or have you
installed your own galaxy on a cloud instance?
It sounds like the latter, in which case you'll need to configure reference as
detailed here: http://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup. You
may also want to experiment with using the preconfigured cloud instances, see
this page for more information on those: http://wiki.galaxyproject.org/CloudMan
On Dec 18, 2012, at 2:21 PM, "Sun, Wenping [USA]" <sun_wenp...@bah.com> wrote:
> Dear Galaxy members,
> I am new to galaxy and just installed galaxy on aws cloud. I am testing how
> it works and have the following question below:
> 1. I tried to test bowtie2 with the dataset I uploaded, however, the
> window for reference genome is very narrow and nothing from pull-down menu
> can be selected. When I omit that option to execute bowtie2, galaxy give
> error message for requesting reference genome. I am using hg19, should I
> upload myself? If so, how?
> 2. Same error happen for me to run fastqc --- the reference genome
> selection window is way too narrow and nothing can be selected
> Thank you very much for your inputs and helps!
> Kind regards,
> The Galaxy User list should be used for the discussion of Galaxy
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> use the interface at:
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: