On Dec 20, 2012, at 2:33 PM, "Sun, Wenping [USA]" <sun_wenp...@bah.com> wrote:
> Thank you very much for the information.
> For the last part of using ec2 instances at aws, is there an option that I
> can control galaxy's operation at aws site? This way I can start/stop the
> instance when I need. I am not willing to terminate the instance since
> everything will be lost.
We'd recommend you not ever stop/start through the aws console -- this is
basically guaranteed to cause problems with your instance. Always use the
cloudman interface (on your ec2 instance -- http://<ec2_instance>/cloud) to
terminate, and then use usegalaxy.org/cloudlaunch to restart it.
> Meantime, I am wondering the data structure on ec2 galaxy instance. Where is
> the location for the data uploaded from the galaxy gui? If I ssh the Ubuntu,
> where is the data directory for holding the work?
Everything will be in /mnt/galaxyData/files (which is symlinked to
/mnt/galaxyTools/galaxy-central/database/files). Note that the filenames will
be by id (like files/000/dataset_001.dat is dataset id 1, etc), and not
particularly accessible in this format without a little extra legwork.
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: