*Galaxy Dec 20, 2012 Distribution & News Brief <http://wiki.galaxyproject.org/News/2012_12_20_DistributionNewsBrief>*

*Complete News Brief <http://wiki.galaxyproject.org/DevNewsBriefs/2012_12_20>*


*Highlights:*

 *

   *Required Metadata Reset* for instances running *Tool Shed
   <http://wiki.galaxyproject.org/Tool%20Shed>* repositories. Be sure
   to *learn how
   <http://wiki.galaxyproject.org/ResettingMetadataForInstalledRepositories>*.


 *

   *Simplified tool config*: all tools (including tool shed repos) can
   now have handlers and runners assigned based on their "short id".

 *

   *New* GFF <http://wiki.galaxyproject.org/Learn/Datatypes#GFF>/GFF3
   <http://wiki.galaxyproject.org/Learn/Datatypes#GFF3> annotation
   support for *Cuffcompare/merge/diff
   <http://cufflinks.cbcb.umd.edu/manual.html>*.

 *

   *More Updated* tools: *TopHat2
   <http://tophat.cbcb.umd.edu/manual.html>*, *Bowtie2
   <http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml>*.

 *

   *Multiple pull-requests* contributed by community (thanks!): *#83
   
<https://bitbucket.org/galaxy/galaxy-central/pull-request/83/allow-a-datatypes-merge-method-to>*,
   *#85
   
<https://bitbucket.org/galaxy/galaxy-central/pull-request/85/another-round-of-bug-fixes-and>*,
   *#90
   
<https://bitbucket.org/galaxy/galaxy-central/pull-request/90/patch-to-make-extended_metadata-loader>*,
   *#91*
   
<https://bitbucket.org/galaxy/galaxy-central/pull-request/91/fixing-missing-jobwrapper-import>.


 *

   *Issue tracking help* is now covered in detailed in our new wiki:
   *Using the Galaxy Issue Board <http://wiki.galaxyproject.org/Issues>*

 *

   *GCC2013 Training Day Topic Nominations
   <http://wiki.galaxyproject.org/Events/GCC2013/TrainingDay> are now
   open* through /*January 11th*/
   <http://wiki.galaxyproject.org/Events/GCC2013/KeyDates>

 *

   *Plus* more *Tool Shed <http://wiki.galaxyproject.org/Tool%20Shed>*
   updates, *Bug Fixes*, and improvements to *Trackster, UI, Libraries,
   and Histories*.

*
getgalaxy.org <http://getgalaxy.org>*

*bitbucket.org/galaxy/galaxy-dist <http://bitbucket.org/galaxy/galaxy-dist>*

*galaxy-dist.readthedocs.org <http://galaxy-dist.readthedocs.org>
*

new:     $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist
upgrade: $ hg pull -u -r 36ad8aa7b922

*Best wishes for a safe and happy holiday*,

/*The Galaxy Team <http://wiki.galaxyproject.org/Galaxy%20Team>*/

--
Jennifer Jackson
http://galaxyproject.org

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