I have just discovered a wonderful Galaxy server for RNA-Seq analysis:
Oqtans http://galaxy.raetschlab.org/. I am impressed by the huge quantity
of useful tools that they have integrated there.
I'm dealing with bacterial transcriptome analysis. We have the genome
sequence of this bacteria.
RNA samples are now been sequenced and I am designing a pipeline for data
analysis. I would like you to suggest me the tools that I can/should use in
order to analyse my data. My sequences come from Ion Torrent platform. For
each sample I have a fastQ file of about 3 million sequences. They are less
than 200 bp and have a mean of 150 bp. I you need more information please
Thank you very much for your help.
*Bernardo Bello Ortí*
Campus de Bellaterra-Universitat Autònoma de Barcelona
08193 Bellaterra (Barcelona, Spain)
Tel.: 647 42 52 63 *www.cresa.es *
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