Hi Bernardo,

The MLB Galaxy Support Team that runs this Galaxy site asks that they be contacted at: gal...@raetschlab.org


(Noted on main home page and listed under "Help -> Email).

They would be the best experts to help you understand and use the tools they have developed. More link/information to their project is in our wiki (http://wiki.galaxyproject.org/PublicGalaxyServers -> Oqtans), but starting with this specific project's support email as a first step would be a good choice to get oriented.

Good luck with your project!

Jen
Galaxy team

On 12/29/12 2:49 AM, Bernardo Bello wrote:
Hi community,

I have just discovered a wonderful Galaxy server for RNA-Seq analysis:
Oqtanshttp://galaxy.raetschlab.org/. I am impressed by the huge quantity
of useful tools that they have integrated there.

I'm dealing with bacterial transcriptome analysis. We have the genome
sequence of this bacteria.

RNA samples are now been sequenced and I am designing a pipeline for
data analysis. I would like you to suggest me the tools that I
can/should use in order to analyse my data. My sequences come from Ion
Torrent platform. For each sample I have a fastQ file of about 3 million
sequences. They are less than 200 bp and have a mean of 150 bp. I you
need more information please ask me.


Thank you very much for your help.
Regards, Bernardo

--

*Bernardo Bello Ortí*

PhD student

CReSA-IRTA

Campus de Bellaterra-Universitat Autònoma de Barcelona

Edifici CReSA

08193  Bellaterra (Barcelona, Spain)

Tel.: 647 42 52 63 *www.cresa.es <http://www.cresa.es> *

*
*




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--
Jennifer Jackson
http://galaxyproject.org
___________________________________________________________
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at usegalaxy.org.  Please keep all replies on the list by
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