How does one get gene names when using cuffdiff when looking at "gene
differential expression testing" results?

I am doing some +/- exposure studies with zebrafish embryos and then
processing the 50bp single-ended fastq files through Galaxy with particular
interest in the cuffdiff readout of differential gene expression.  It seems
to be working well but my readout is only giving me gene ID's.  It would by
more efficient if I could get gene names from the output.

I suspect I may be able to do this through selection of options from the
UCSC TABLE BROWSER when I use its Zv9 danRer7 assembly as a reference
genome.   I see a place for selected genes but not for all the identified

Is this something that could be done directly or is there just a "beyond
Galaxy" method of gene gene lists from a list of gene ID's.


el linney
Duke University Medical Center
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