Hi there,

I obtained two fastq files from GA paired end run. I filtered each file by 
quality using fastq tool kit. Then some forward reads may be removed by low 
quality whereas the reverse counterparts are OK to be remained on the other 
file, or vice versa.

I want to remove those "unpaired" reads from filtered fastq files so that the 
two new fastq files contain the identical sets of the reads.

Is it possible to do it on galaxy?

Thank you very much.

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