Hi Davide,

Would you be able to send this in as a bug report? This will allow us to check out the details. You basically just click on the "green bug icon" for one of the datasets in the group and submit, but this wiki also explains:
http://wiki.galaxyproject.org/Support#Reporting_tool_errors

Thanks Davide, sorry to learn this was problematic after the wait!

Jen
Galaxy team

On 2/1/13 12:26 AM, Davide Degli Esposti wrote:
Dear Jen,

after a couple of days of running cufflinks on a sam file (data 9) with
an annotated reference in gtf (data 28), I have this message in return
that I am not able to decode:

32: Cufflinks on data 9 and data 28: total map mass
error
An error occurred running this job:/cufflinks v2.0.2 cufflinks -q
--no-update-check -I 300000 -F 0.050000 -j 0.150000 -p 8 -G
/galaxy/main_pool/pool6/files/005/663/dataset_5663874.dat -u -N -b
/galaxy/data/hg19/sam_index/hg19.fa Error running cufflinks. return code
= 1 cufflinks: /lib64/lib/
/
/
/Thank you for you help/
/Best regards/
/
/
/Davide/
---
Davide Degli Esposti, PhD
Epigenetic (EGE) Group
International Agency for Research on Cancer
Tel.+33 4 72738036
Fax.+33 4 72738322
150, cours Albert Thomas
69372 Lyon Cedex 08
France



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