> In addition to reducing the "the Minimum length of reas segments", do I also
> need to reduce "Anchor length" to get more mapping on splicing junctins?
Definitely worth a try.
> Looks like the setting for "Anchor length" only affects the number of mapped
> splicing junctions reported in the .splicing junctions output. Is my
> understanding correct?
No, it will affect mapped reads as well.
> Does the "regions" mean the number of mapped splicing junctions?
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