Dear all,

I am a Phd student working on chicken genomics, with limited experience in the 
bio-informatics field. I performed an RNA-Seq experiment with single end 50 bp 
reads to find differential gene expressions between different groups. I have 
mapped this data with Tophat. Does anyone know how I can get the raw data count 
out of galaxy in a tab-delimited file? I would like to perform a statistical 
analysis in other software, without the RPKM normalization that cufflinks 
offers.  Thank you very much.

Have a nice day.

Yours Sincerely, Els

Ir. Els Willems
KU Leuven
Department of Biosystems
Division Livestock - Nutrition - Quality
Laboratory of Livestock Physiology
Kasteelpark Arenberg 30 bus 2456
B - 3001 Heverlee
T (+32) 016 32 17 29
F (+32) 016 32 19 94

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