Hi Mathew,

Please see the tool 'NGS: QC and manipulation -> FASTQ Trimmer by column'.

Make sure your data is in ".fastqsanger" format first - either assigned or through grooming:
See "FASTQ": http://wiki.galaxyproject.org/Support#Dataset_special_cases

Take care,

Jen
Galaxy team

On 5/1/13 7:29 AM, Mathew Bunj wrote:
Is it possible to trim certain number of bases from 3' end with taking into consideration quality of reads. To explain it further, I want to remove 10bases from 3 ' end of all reads and keep first forty.

Thanks


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