Jen, Thank you very much for the information. They are very informative.
I found the htgs and wgs databases information there. What does nt 28-Jan-2013 stand for? Meantime, if I am looking for virus containing database, I found wgs is one. Can anyone confirm or advice further if there is other options (database)? Thank you again! Kathryn From: Jennifer Jackson [mailto:j...@bx.psu.edu] Sent: Friday, May 24, 2013 3:36 PM To: Sun, Wenping [USA] Cc: galaxy-user@lists.bx.psu.edu Subject: [External] Re: [galaxy-user] Question on megablast databases Hi Kathryn, These first three are three different types of sequence databases available from GenBank The last is a genome assembly for the phiX174 genome. Information about all can be found here: http://www.ncbi.nlm.nih.gov/genbank/ There are many uses, one example is covered in our Metagenomics publication: https://main.g2.bx.psu.edu/u/aun1/p/windshield-splatter Thanks! Jen Galaxy team On 5/24/13 6:59 AM, Sun, Wenping [USA] wrote: Dear galaxy members, I have a question on the databases used in megablast module from galaxy. There are four db options to blast against with - 1. htgs 28-Jan-2013 2. nt 28-Jan-2013 3. wgs 28-Jan-2013 4. phiX174 Is there any further information to guide which database would be appropriate to use? In addition, how to find the genome information contained in each database? Many thanks, Kathryn ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- Jennifer Hillman-Jackson Galaxy Support and Training http://galaxyproject.org
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
