Hi Daquing,
No, Galaxy does not work with the data in this format and no tools have
been donated to the tool shed by the data format authors to do the
conversion. You'll have to convert before loading into Galaxy, but from
there it can be prepped using tools in the group "FASTQ Manipulation".
There are also some mapping tools that use converted SOLiD data as input
specifically, these can be used on the Test server
https://test.g2.bx.psu.edu/ or a local or cloud Galaxy.
http://getgalaxy.org
http://usegalaxy.org/cloud
Best,
Jen
Galaxy team
On 6/13/13 3:53 PM, Wang, Daqing wrote:
Hello,
I wonder if Galaxy take SOLiD XSQ format data as input for mapping. I
know it takes csfasta/qual data.
Does anyone try this kind of analysis with SOLiD XSQ format?
Any feedback and advice is appreciate it.
Thank you!
Daqing Wang**
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
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To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
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