We are starting a project in our laboratory which aims to annotate a given set
of SNPs lying in non-coding DNA from GWAS studies.
We would like to have the most comprehensive view of those non-coding SNPs
putative and validated functions.
We've already been through publications about Galaxy and GalaxyENCODE, we also
been searching for similar request on the FAQ but found no similar request
dated from 2013. We would like to know about the latest add to Galaxy, as we've
seen that part of the BEDtools have been integrated to Galaxy for example.
Our question is:
-What Tools available in Galaxy would take as an input a list of non-coding
SNPs (or DNA regions) identified in our GWAS studies and return annotations of
those SNPs (annotations such as histones modification, transcription factor
binding, and other non-coding DNA features around those SNP) ?
We haven't found a searching option on Galaxy that would allows us to look for
tools by keywords related to their function or purpose. We assumed that we
might have missed something, thank you for letting us know if there were such
Thanks you very much for your time,
The Center for Neurogenomics and Cognitive Research
De Boelelaan 1085
1081 HV Amsterdam
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