On Wednesday, July 31, 2013, Mayank Tandon wrote:

> That's a neat trick, and I definitely wouldn't have thought of that
> approach, so thanks for that!
>
> After I finished writing this out, I realized it was super long.  So here
> are the questions I'm asking up front, so you can choose whether or not to
> read the details.  Thanks!
>
> 1. How do I output the quality scores when converting from FASTQ to FASTA?
>

You can't, unless you mean converting a FASTQ file into a FASTA and
matching QUAL file?

Peter
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