Hi Anto,

Thank you very much for your reply! I tried Galaxy/NBIC. However, I had
problem with uploading my files. I used FTP, because the file I had was
larger than 2G, but I couldn’t connect to the NBIC FTP. Do you have some
idea how to solve the problem? Thanks!

Yan

 

发件人: Anto Praveen Rajkumar Rajamani [mailto:a...@hum-gen.au.dk] 
发送时间: Thursday, August 22, 2013 3:14 PM
收件人: Yan He; galaxy-user@lists.bx.psu.edu
主题: RE: [galaxy-user] Counts of mapped reads for each gene?

 

Hi Yan, 

 

You may use the HTseq count wrapper in the http://galaxy.nbic.nl/.

It does a good job and I could employ edgeR on that count matrix.

Good luck.

 

Best wishes,

Anto

 

 

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