Hi Lilach, One method would be by checking the contents of the log file for entries such as "submitting file /Groups/Galaxy/galaxy-dist/database/pbs/galaxy_48152.sh". The contents of the file listed contain the command line issues by Galaxy.
From: lilach noy <lilach...@gmail.com<mailto:lilach...@gmail.com>> Date: Tuesday, August 27, 2013 7:29 AM To: "galaxy-u...@bx.psu.edu<mailto:galaxy-u...@bx.psu.edu>" <galaxy-u...@bx.psu.edu<mailto:galaxy-u...@bx.psu.edu>> Subject: [galaxy-user] watching command line to a query Hello, How can i see the command line a query executes? To be more specific i am new to the Galaxy and plan to use as a way to learn how to run queries locally. In order to understand not only the functions available but also the way i can write it on my own i'd be happy to be able to see the command line that execute my queries. How can I see this? Thank you
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