Hi,

 

I had fastq.gz files in an Amazon S3 bucket. I created a Galaxy on the Cloud
instance using CloudMan. I used GetData and pasted in the url's of the
fastq.gz files into Galaxy on the Cloud. They were successfully imported
into the session and converted to fastq's, it seems. However, at the next
step (fastq groomer), Galaxy on the Cloud appears to expect that the
imported and converted fastq files are in the same S3 bucket where the
fastq.gz files were. But, they are not there. I read somewhere in
documentation or notes that the data is actually in /mnt/galaxyData folder.
However, I am not sure how to point fastq groomer to this place in the web
interface  or alternatively, I am not sure how to move the fastq's back to
the s3 bucket (w/o downloading and re-uploading which would be very
time-consuming). Thanks for any help you can provide. 

 

PT

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