At Wed, 30 Oct 2013 21:51:05 -0400, Jeremy Goecks wrote: > > It turns out that your artificial test is a bit too artificial. In order to > display a coverage plot, Trackster converts reads in a BAM to BigWig using a > two step process: > > (1) BAM to bedgraph; > (2) bedgraph to bigwig > > Your super simple example generates an empty file in step 1 because your > single read does not map to Araly1, and the tool used in step 2 > (bedGraphToBigWig) fails with the error that you're seeing. This is a > corner-case bug, and I've create a card for this so you can track its > resolution: https://trello.com/c/kMFUNawL
Hi Jeremy, Bjoern, Thanks for your help. Yes, my data file wasn't very good. I tried again with a more realistic sample, and it worked fine. Sorry for the noise. cheers, Simon ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
